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SoftGenetics

SoftGenetics Products - GeneMarker AFLP/Genotyping Software

GeneMarker™

GeneMarker™ AFLP/Genotyping software has been designed and created in order to provide genetic researchers with a highly useable genotyping analysis tool. We incorporated the suggestions and requirements of several research groups into the software. Their main requirements were ease of use, high accuracy, flexibility and low acquisition cost.

GeneMarker can perform analysis on up to 1,000 lanes of data generated by either slab gel or capillary electrophoresis.

Nearly every function of GeneMarker has been automated so that once the template is selected from the menu, or created by the user, the software will automatically perform the analysis, providing a myriad of display and reporting options. Once the analysis has been completed and confirmed the software saves all of the analysis parameters, raw data and results for easy archiving and call back at a future date.

GeneMarker for AFLP Analysis
GeneMarker for Fragment Analysis
GeneMarker for AFLP Analysis
GeneMarker for Fragment Analysis

GeneMarker is an excellent tool for nearly all of Genotyping applications. The exclusive gel image provides a quick overview of the AFLP analysis, allowing rapid discernment of areas of interest. In the Fragment/microsatellite mode, the soft ware provides a quick 4 or 5 colour overview of the analysis.

In both cases an exportable text report that can be that can be easily dragged open is provided for rapid viewing of analysis results by wavelength (colour).

Raw Data
Quality Control of Sizing
GeneMarker provides a lane by lane overview of unprocessed raw data, permitting a quick quality control of the data.
GeneMarker provides a quality control graph indicating the linearity of the size call of each lane.
GeneMarker provides a lane by lane overview of unprocessed raw data, permitting a quick quality control of the data.
GeneMarker provides a quality control graph indicating the linearity of the size call of each lane.

 

Simple, Easy Operation
Auto Run Wizard
GeneMarker provides a lane by lane overview of unprocessed raw data, permitting a quick quality control of the data.
GeneMarker provides a quality control graph indicating the linearity of the size call of each lane.
Once analysis parameters have been set or saved, two mouse clicks, (data entry, and then run) are all it takes to run an analysis on up to 1000 lanes of capillary data.
GeneMarker’s Run Wizard makes parameter setting easy and straight forward. Previously saved parameters can be applied to subsequent analyses, increasing consistency while reducing analyst set up time.

Analysis Parameter Setting Made Easy

GeneMarker’s wizard simplifies parameter setting by “walking” the user through 3 simple steps. Templates can either be selected from several embedded templates or the user can create and save additional templates; detection settings are presented in one dialogue box that creates required flexibility in a simple to use format. Panel management and creation requires only a few mouse clicks! Once set the parameters can be saved and called back for future analysis.

Analysis Reporting
 
GeneMarker provides a lane by lane overview of unprocessed raw data, permitting a quick quality control of the data.
GeneMarker provides a quality control graph indicating the linearity of the size call of each lane.
Analysis results can be sorted and manipulated to meet report requirements and then saved as a text file or input into LIMs or other data base systems.
GeneMarker will print reports of analysis for either all or selected sample sets. User can choose to include electropherograms, analysis text, and output sequence.

GeneMarker Software for Terminal-Restriction
Fragment Length Polymorphism (T-RFLP) Data Analysis

 Download the T-RFLP PDF PDF icon (198Kb)

 For more details, download the Mutation Surveyor Software v2.5 PDF PDF icon (518Kb)
 Download the full Genemarker Software PDF PDF icon (1.01Mb)

 

GM-001 GM AFLP/Fragment Analysis Software single user (1000 traces) - Academia (Qty discounts on request)
1000 traces
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GM-001 GM AFLP/Fragment Analysis software sgl user (1000 traces) - Non Academia (Qty discounts on request)
1000 traces
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GM-001N GeneMarker Network Version & User Licence - Non Academia (Qty discounts on request)
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GM-001N GeneMarker Network Version & User Licence-Academia (Qty discounts on request)
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GM-003 GeneMarker single user annual update program - Academia (applies to both network and dongle based)
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GM-003 GeneMarker sgle user annual update program - Non Academia (applies to both network and dongle based)
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